Water in car problem

Leave the carpet out in the sun for a couple of days and then shampoo. Wipe off everything else

Thanks for all the suggestions. Bleach was my first idea but I thought that would cause the color to fade. Hoped you guys could help me come up with an alternative. Appreciate your input.

If the bleach doesn't flush out the debris you will have some cool looking white spots in the carpet

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Is there a way for me to disinfect and clean the carpet as well as the dashboard, steering wheel, etc...? I want to start driving this vehicle again but don't want to get sick doing it. Thanks.

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This happened in the trunk on both of our Camrys growing up. One was caused by a bad trunk seal, the other was caused by a missing under-body trunk vent that the manufacturer forgot to install (so the tires would splash water into the cutout for said vent). It actually caused the spare tire to get rusted onto the mounts in the spare tire well.

You'll probably need to rent a carpet shampoo device like a Rug Doctor to handle the mildew smell in the head liner and trunk liner (make sure the trunk liner isn't backed by cardboard like some of the Japanese cars first). If the trunk liner is soaked and collapsed, it's easy to buy another and reinstall. Don't be too liberal with that cleaner because too much moisture can cause fluff pulp junk manufacturers use to quell road noise in the headliner to sag. It's better to clean, let it dry, clean again, and repeat until the odor is gone.

There's a dehumidifier bag products you can buy on Amazon that will keep the interior dry in case there's still a small leak after you clean it. Throw a few of those in the trunk and in the cabin and replace every couple of weeks.

Obviously the car needs to be covered or the sunroof needs to be repaired. I imagine there might be leaves or algae clogging up the sun roof drains. The suggestion about bleach and maybe a small brush might be a good start for repairing it.