Mortgage Questions?

I am an independent contractor that, by my CPAs instructions set up my business to be taxed as a regular corporation and pay myself and my wife a salary. I am looking to get a mortgage and have started to get information from various lending institutions and it can be difficult to really figure out what I can use as income.

I need to show them 2 year tax returns (1120 - Corporate & 1040 - Individual) for an average.

What I am nervous about is that in 2009 I showed a majority of my income on the corporate side and low income on the individual and in 2010 I will be doing the opposite.

One mortgage officer sent me a Fannie Mae Cash Flow Analysis to begin figuring out what income I can use for mortgage underwriting purposes and I have filled it out completely. My grand total increases substantially, but my corporate taxable income decreased substantially as well.

My question is: Am I okay to believe that the mortgage underwriter will be fine with the drop off in corporate income, seeing that I compensated by paying myself I higher salary and dividend.