re: Fringe - Marathon Viewing - SPOILERS

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They work for a secret section of the government. I doubt that would matter at all. They can pretty much do whatever the hell they want.

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Not really. They work for division of the FBI and early on they had no clue they were dealing with multiple worlds and world ending scenarios.

At this point in the show, they would still need to prosecute people in the normal manner thus they would not have risked tainting the evidence pool by breaking into an apartment.

Heck, it was a small nitpick but it bugged me. Even worse when House and company used to break into homes. Heck it made even less sense on House.