Are your bolts the correct size? some models have a size a hair too small
9/16ths on the trackbar (running a JKS right now). Control arms are all upgraded to Rock Krawlers and they are fit for factory, upgrading to 9/16th requires drilling out the control arm bushings.
Axle straight? C's bent?
Axles straight, C's less than a degree off.
When you changed tie rods, did you change the ends as well?
Different TRE's for the different tie rods. Both factory though, not upgrade. Same with the drag link.
What size tire do run and on what axle?
BFG A/T 35x12.50x15 tire, 15" rim. Running on D44's front and rear.